PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G042400.1
Common NamePHAVU_004G042400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14617.1 Da    PI: 10.5853
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G042400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-2669119151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                         k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f  +gkl+eyss
  Phvul.004G042400.1  69 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 119
                         78***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.02561121IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-3461120IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-2762121IPR002100Transcription factor, MADS-box
CDDcd002653.72E-3262121No hitNo description
PRINTSPR004041.7E-286383IPR002100Transcription factor, MADS-box
PROSITE patternPS00350063117IPR002100Transcription factor, MADS-box
PfamPF003197.0E-2471117IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-288398IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-2898119IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MLACACKEGD PTTSNYLHFR TVLAHHKYRK IPCYYIPQFI THSTHFLFSF HLFFSFLSFK  60
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE  120
SRFVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-1762119158Myocyte-specific enhancer factor 2A
3mu6_B2e-1762119158Myocyte-specific enhancer factor 2A
3mu6_C2e-1762119158Myocyte-specific enhancer factor 2A
3mu6_D2e-1762119158Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-78AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151390.14e-89hypothetical protein PHAVU_004G042400g
TrEMBLV7BZR44e-89V7BZR4_PHAVU; Uncharacterized protein
STRINGGLYMA19G04326.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-31AGAMOUS-like 8